Speaker
Andres Tanasijczuk
Description
We will only show how to run with Snakemake on a laptop. Requirements: Snakemake and Singularity/Apptainer, which we will show how to install them with conda.
Since access to the ESCAPE Data Lake requires authentication (an account in ESCAPE's Indigo AIM), I decided not to download the data from the ESCAPE Data Lake, but from the public webserver http://et-origin.cism.ucl.ac.be/.
We will be using a docker container for the environment and run the (relevant steps of the) pipeline with Singularity/Apptainer.
